.. _conversion_gallery:

Conversion Gallery
==================

The examples here are guaranteed to be running correctly with our testing suite. Their aim is to be a showcase of the
library capabilities and to get you to hit the ground running with your own conversion.

Extracellular electrophysiology
-------------------------------

Recording
~~~~~~~~~

.. toctree::
    :maxdepth: 1

    AlphaOmega <recording/alphaomega>
    Axon <recording/axon>
    Axona <recording/axona>
    Biocam <recording/biocam>
    Blackrock <recording/blackrock>
    European Data Format (EDF) <recording/edf>
    Intan <recording/intan>
    MaxOne <recording/maxone>
    MCSRaw <recording/mcsraw>
    MEArec <recording/mearec>
    Neuralynx <recording/neuralynx>
    NeuroScope <recording/neuroscope>
    OpenEphys <recording/openephys>
    Plexon <recording/plexon>
    Plexon2 <recording/plexon2>
    Spike2 <recording/spike2>
    Spikegadgets <recording/spikegadgets>
    SpikeGLX <recording/spikeglx>
    Tucker-Davis Technologies (TDT) <recording/tdt>
    White Matter <recording/whitematter>

Sorting
~~~~~~~

.. toctree::
    :maxdepth: 1

    Blackrock  <sorting/blackrock>
    Cell Explorer <sorting/cellexplorer>
    KiloSort <sorting/kilosort>
    Neuralynx <sorting/neuralynx>
    NeuroScope <sorting/neuroscope>
    Phy <sorting/phy>
    Plexon <sorting/plexon>

Intracellular electrophysiology
-------------------------------

.. toctree::
    :maxdepth: 1

    Axon Binary File (ABF) <recording/abf>

Optical physiology
------------------

Imaging
~~~~~~~

.. toctree::
    :maxdepth: 1

    Bruker <imaging/brukertiff>
    Femtonics <imaging/femtonics>
    HDF5 <imaging/hdf5imaging>
    Micro-Manager <imaging/micromanagertiff>
    Miniscope <imaging/miniscope>
    Inscopix <imaging/inscopix>
    Scanbox <imaging/scanbox>
    ScanImage <imaging/scanimage>
    ScanImage Legacy (v3.8 and older) <imaging/scanimage_legacy>
    Thor <imaging/thor>
    Tiff <imaging/tiff>

Segmentation
~~~~~~~~~~~~

.. toctree::
    :maxdepth: 1

    Caiman <segmentation/caiman>
    CNMFE <segmentation/cnmfe>
    EXTRACT <segmentation/extract>
    Inscopix <segmentation/inscopix>
    Suite2P <segmentation/suite2p>

Fiber Photometry
~~~~~~~~~~~~~~~~

.. toctree::
    :maxdepth: 1

    TDT Fiber Photometry <fiberphotometry/tdt_fp>

Behavior
--------

.. toctree::
    :maxdepth: 1

    Audio <behavior/audio>
    DeepLabCut <behavior/deeplabcut>
    FicTrac <behavior/fictrac>
    LightningPose <behavior/lightningpose>
    Neuralynx NVT <behavior/neuralynx_nvt>
    SLEAP <behavior/sleap>
    Videos <behavior/video>
    MedPC <behavior/medpc>


Image
-----

.. toctree::
    :maxdepth: 1

    Image (png, jpeg, tiff, etc) <imaging/image>

Text
----

.. toctree::
    :maxdepth: 1

    CSV <text/csv>
    Excel <text/excel>

Common interface combinations
-----------------------------

.. toctree::
    :maxdepth: 1

    combinations/spikeglx_and_phy
    combinations/tiff_and_suite2p
    combinations/ecephys_pose_estimation

.. note::
If you do not see the format you need, feel free to `request it <https://github.com/catalystneuro/neuroconv/issues/new?assignees=&labels=enhancement,data+interfaces&template=format_request.yml>`_ or
  :ref:`build-data-interface`.